To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

In most cases, you don't need to download the package archive at all.

graphite

DOI: 10.18129/B9.bioc.graphite    

This is the development version of graphite; for the stable release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Bioconductor version: Development (3.6)

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

 

PDF R Script GRAPH Interaction from pathway Topological Environment
PDF   Reference Manual
Text   NEWS

Details

biocViews BioCarta, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software, ThirdPartyClient
Version 1.23.3
In Bioconductor since BioC 2.9 (R-2.14) (6 years)
License AGPL-3
Depends R (>= 2.10), methods
Imports AnnotationDbi, graph, rappdirs, stats, utils
LinkingTo
Suggests a4Preproc, ALL, BiocStyle, clipper, hgu133plus2.db, hgu95av2.db, httr, org.Hs.eg.db, RCy3, SPIA(>= 2.2), testthat, topologyGSA (>= 1.4.0)
SystemRequirements
Enhances DEGraph
URL
Depends On Me ToPASeq
Imports Me facopy, mogsa, ReactomePA
Suggests Me clipper
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source graphite_1.23.3.tar.gz
Windows Binary graphite_1.23.3.zip
Mac OS X 10.11 (El Capitan) graphite_1.23.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/graphite
Package Short Url http://bioconductor.org/packages/graphite/
Package Downloads Report Download Stats

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