A Framework for Quality Control

Bioconductor version: Development (3.0)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script The 'qcmetrics' infrastructure for quality control and reporting
PDF   Reference Manual
Text   NEWS


biocViews MassSpectrometry, Microarray, Proteomics, QualityControl, Software, Visualization
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 2.10)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf
System Requirements
URL https://github.com/lgatto/qcmetrics
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source qcmetrics_1.3.0.tar.gz
Windows Binary qcmetrics_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) qcmetrics_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center