ChromHeatMap

DOI: 10.18129/B9.bioc.ChromHeatMap    

Heat map plotting by genome coordinate

Bioconductor version: Release (3.7)

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Citation (from within R, enter citation("ChromHeatMap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")

 

PDF R Script Plotting expression data with ChromHeatMap
PDF   Reference Manual

Details

biocViews Software, Visualization
Version 1.34.0
In Bioconductor since BioC 2.5 (R-2.10) (9 years)
License Artistic-2.0
Depends R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
LinkingTo
Suggests ALL, hgu95av2.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChromHeatMap_1.34.0.tar.gz
Windows Binary ChromHeatMap_1.34.0.zip
Mac OS X 10.11 (El Capitan) ChromHeatMap_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChromHeatMap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChromHeatMap
Package Short Url http://bioconductor.org/packages/ChromHeatMap/
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