DOI: 10.18129/B9.bioc.Statial    

A package to identify changes in cell state relative to spatial associations

Bioconductor version: Release (3.16)

Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.

Author: Farhan Ameen [aut, cre], Sourish Iyengar [aut], Shila Ghazanfar [aut], Ellis Patrick [aut]

Maintainer: Farhan Ameen <fame2827 at>

Citation (from within R, enter citation("Statial")):


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biocViews SingleCell, Software, Spatial
Version 1.0.1
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License GPL-3
Depends R (>= 4.1.0)
Imports BiocParallel, spatstat.geom, concaveman, tidyverse, data.table, spatstat.explore, dplyr, tidyr, SingleCellExperiment, tibble, stringr, tidyselect, ggplot2, methods, stats
Suggests BiocStyle, knitr, testthat (>= 3.0.0)
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