To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("plethy")

In most cases, you don't need to download the package archive at all.

plethy

R framework for exploration and analysis of respirometry data

Bioconductor version: Release (3.0)

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Citation (from within R, enter citation("plethy")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("plethy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plethy")

 

PDF R Script plethy
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version 1.4.3
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.1.0), methods, BiocGenerics, S4Vectors
Imports Streamer, DBI, RSQLite (>= 1.0.0), IRanges, reshape2, plyr, RColorBrewer, ggplot2
Suggests RUnit, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source plethy_1.4.3.tar.gz
Windows Binary plethy_1.4.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) plethy_1.4.3.tgz
Mac OS X 10.9 (Mavericks) plethy_1.4.3.tgz
Browse/checkout source (username/password: readonly)
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