plier

Implements the Affymetrix PLIER algorithm

Bioconductor version: Release (2.14)

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

Author: Affymetrix Inc., Crispin J Miller, PICR

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("plier")

To cite this package in a publication, start R and enter:

    citation("plier")

Documentation

PDF   Reference Manual
Text   README

Details

biocViews Software
Version 1.34.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends R (>= 2.0), methods
Imports affy, Biobase, methods
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me piano, virtualArray

Package Downloads

Package Source plier_1.34.0.tar.gz
Windows Binary plier_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) plier_1.34.0.tgz
Mac OS X 10.9 (Mavericks)
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