To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("snpStats")

In most cases, you don't need to download the package archive at all.

snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: Release (3.0)

Classes and statistical methods for large SNP association studies, extending the snpMatrix package

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("snpStats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

 

PDF R Script Data input
PDF R Script Fst
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, Software
Version 1.16.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.10.0), survival, Matrix, methods
Imports graphics, grDevices, stats, utils, BiocGenerics, zlibbioc
Suggests hexbin
System Requirements
URL
Depends On Me GGBase, GGdata, ggtut
Imports Me FunciSNP, GGtools, gwascat
Suggests Me crlmm, GWASTools, VariantAnnotation

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snpStats_1.16.0.tar.gz
Windows Binary snpStats_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) snpStats_1.16.0.tgz
Mac OS X 10.9 (Mavericks) snpStats_1.16.0.tgz
Browse/checkout source (username/password: readonly)
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