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SNPlocs.Hsapiens.dbSNP155.GRCh38

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly


Bioconductor version: Release (3.18)

The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP155.GRCh38")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.24
License Artistic-2.0
Depends R (>= 4.2.0), BSgenome(>= 1.67.2)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
System Requirements
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Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
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Depends On Me
Imports Me
Suggests Me MungeSumstats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.24.tar.gz
Windows Binary
macOS Binary (x86_64)
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Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/
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