Rcwl
An R interface to the Common Workflow Language
Bioconductor version: 3.24 · Package version: 1.29.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rcwl")Details
| Maintainer | Qiang Hu <qiang.hu@roswellpark.org> |
| Author | Qiang Hu [aut, cre], Qian Liu [aut] |
| License | GPL-2 | file LICENSE |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ImmunoOncology, Software, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/Rcwl/ |
Citation
From within R, enter citation("Rcwl"):
Qiang Hu, Qian Liu. Rcwl: An R interface to the Common Workflow Language. doi:10.18129/B9.bioc.Rcwl, R package version 1.29.0, https://bioconductor.org/packages/Rcwl.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rcwl_1.29.0.tar.gz |
| macOS binary (arm64) | Rcwl_1.29.0.tgz |
| macOS binary (x86_64) | Rcwl_1.29.0.tgz |
Dependencies
Depends: R (>= 3.6), yaml, methods, S4Vectors
Imports: utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk