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Rcwl

This is the development version of Rcwl; for the stable release version, see Rcwl.

An R interface to the Common Workflow Language


Bioconductor version: Development (3.19)

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

Author: Qiang Hu [aut, cre], Qian Liu [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("Rcwl")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rcwl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcwl")
Rcwl: An R interface to the Common Workflow Language HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ImmunoOncology, Software, WorkflowStep
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-2 | file LICENSE
Depends R (>= 3.6), yaml, methods, S4Vectors
Imports utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me RcwlPipelines
Imports Me ReUseData
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rcwl_1.19.0.tar.gz
Windows Binary
macOS Binary (x86_64) Rcwl_1.19.0.tgz
macOS Binary (arm64) Rcwl_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rcwl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rcwl
Bioc Package Browser https://code.bioconductor.org/browse/Rcwl/
Package Short Url https://bioconductor.org/packages/Rcwl/
Package Downloads Report Download Stats