cBioPortalData

DOI: 10.18129/B9.bioc.cBioPortalData    

This is the development version of cBioPortalData; for the stable release version, see cBioPortalData.

Exposes and makes available data from the cBioPortal web resources

Bioconductor version: Development (3.13)

The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes.

Author: Levi Waldron [aut], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("cBioPortalData")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cBioPortalData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cBioPortalData")

 

HTML R Script cBioPortal Quick-start Guide
HTML R Script cBioPortal User Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software, ThirdPartyClient
Version 2.3.3
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License AGPL-3
Depends R (>= 4.0.0), AnVIL, MultiAssayExperiment
Imports BiocFileCache(>= 1.5.3), digest, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, methods, readr, RaggedExperiment, RTCGAToolbox(>= 2.19.7), S4Vectors, SummarizedExperiment, stats, tibble, tidyr, TCGAutils(>= 1.9.4), utils
LinkingTo
Suggests BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
BugReports https://github.com/waldronlab/cBioPortalData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cBioPortalData_2.3.3.tar.gz
Windows Binary cBioPortalData_2.3.3.zip
macOS 10.13 (High Sierra) cBioPortalData_2.3.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/cBioPortalData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cBioPortalData
Package Short Url https://bioconductor.org/packages/cBioPortalData/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: