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canceR

This is the development version of canceR; for the stable release version, see canceR.

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC


Bioconductor version: Development (3.19)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("canceR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("canceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Clustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software
Version 1.37.1
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends R (>= 4.3), tcltk, cBioPortalData
Imports GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, tidyr, dplyr, graphics, stats, utils, grDevices, R.oo, R.methodsS3
System Requirements Tktable, BWidget
URL
Bug Reports https://github.com/kmezhoud/canceR/issues
See More
Suggests testthat (>= 3.1), knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/canceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/canceR
Package Short Url https://bioconductor.org/packages/canceR/
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