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This is the development version of gDR; for the stable release version, see gDR.

Umbrella package for R packages in the gDR suite

Bioconductor version: Development (3.20)

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Author: Allison Vuong [aut], Bartosz Czech [aut] , Arkadiusz Gladki [cre, aut] , Marc Hafner [aut] , Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at>

Citation (from within R, enter citation("gDR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Running the drug response processing pipeline HTML R Script
Reference Manual PDF


biocViews DataImport, ShinyApps, Software
Version 1.3.1
In Bioconductor since BioC 3.18 (R-4.3) (0.5 years)
License Artistic-2.0
Depends R (>= 4.2), gDRcore(>= 1.1.19), gDRimport(>= 1.1.9), gDRutils(>= 1.1.12)
System Requirements
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Suggests BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 1.1.5), gDRtestData(>= 1.1.10), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml
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Follow Installation instructions to use this package in your R session.

Source Package gDR_1.3.1.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) gDR_1.3.1.tgz
macOS Binary (arm64) gDR_1.3.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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