gDR

DOI: 10.18129/B9.bioc.gDR  

Umbrella package for R packages in the gDR suite

Bioconductor version: Release (3.18)

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Author: Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDR")

 

HTML	R Script	Running the drug response processing pipeline
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, ShinyApps, Software
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2), gDRcore(>= 0.99.12), gDRimport(>= 0.99.10), gDRutils(>= 0.99.13)
Imports
LinkingTo
Suggests	BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 0.99.11), gDRtestData(>= 0.99.11), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gDR_1.0.0.tar.gz
Windows Binary	gDR_1.0.0.zip
macOS Binary (x86_64)	gDR_1.0.0.tgz
macOS Binary (arm64)	gDR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gDR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDR
Bioc Package Browser	https://code.bioconductor.org/browse/gDR/
Package Short Url	https://bioconductor.org/packages/gDR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive