DOI: 10.18129/B9.bioc.restfulSE    

This is the development version of restfulSE; for the stable release version, see restfulSE.

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

Bioconductor version: Development (3.8)

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at>

Citation (from within R, enter citation("restfulSE")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
BiocManager::install("restfulSE", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script restfulSE -- experiments with SE interface to remote HDF5
PDF   Reference Manual
Text   NEWS


biocViews Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics
Version 1.3.7
License Artistic-2.0
Depends R (>= 3.5), SummarizedExperiment, DelayedArray
Imports utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang
Suggests knitr, testthat, Rtsne,,, BiocStyle
Depends On Me tenXplore
Imports Me
Suggests Me BiocOncoTK, BiocSklearn
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Follow Installation instructions to use this package in your R session.

Source Package restfulSE_1.3.7.tar.gz
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Mac OS X 10.11 (El Capitan) restfulSE_1.3.7.tgz
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