gDRimport

DOI: 10.18129/B9.bioc.gDRimport  

Package for handling the import of dose-response data

Bioconductor version: Release (3.18)

The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

Author: Arkadiusz Gladki [aut, cre], Bartosz Czech [aut], Marc Hafner [aut], Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut], Janina Smola [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDRimport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRimport")

 

HTML	R Script	Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet
HTML	R Script	Converting PharmacoSet Drug Response Data into gDR object
HTML	R Script	gDRimport
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils(>= 0.99.5), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx
LinkingTo
Suggests	BiocStyle, gDRtestData(>= 0.99.10), gDRstyle(>= 0.99.11), knitr, purrr, qs, testthat
SystemRequirements
Enhances
URL
Depends On Me	gDR
Imports Me
Suggests Me	gDRcore
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gDRimport_1.0.0.tar.gz
Windows Binary	gDRimport_1.0.0.zip
macOS Binary (x86_64)	gDRimport_1.0.0.tgz
macOS Binary (arm64)	gDRimport_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gDRimport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDRimport
Bioc Package Browser	https://code.bioconductor.org/browse/gDRimport/
Package Short Url	https://bioconductor.org/packages/gDRimport/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive