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Bioconductor version: Release (3.18)
The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.
Author: Arkadiusz Gladki [aut, cre], Bartosz Czech [aut], Marc Hafner [aut], Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut], Janina Smola [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
Citation (from within R,
enter citation("gDRimport")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("gDRimport")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRimport")
HTML | R Script | Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet |
HTML | R Script | Converting PharmacoSet Drug Response Data into gDR object |
HTML | R Script | gDRimport |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, Infrastructure, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 4.2) |
Imports | assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils(>= 0.99.5), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx |
LinkingTo | |
Suggests | BiocStyle, gDRtestData(>= 0.99.10), gDRstyle(>= 0.99.11), knitr, purrr, qs, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | gDR |
Imports Me | |
Suggests Me | gDRcore |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | gDRimport_1.0.0.tar.gz |
Windows Binary | gDRimport_1.0.0.zip |
macOS Binary (x86_64) | gDRimport_1.0.0.tgz |
macOS Binary (arm64) | gDRimport_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gDRimport |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDRimport |
Bioc Package Browser | https://code.bioconductor.org/browse/gDRimport/ |
Package Short Url | https://bioconductor.org/packages/gDRimport/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.18 | Source Archive |
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