To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoProc")

In most cases, you don't need to download the package archive at all.

ontoProc

DOI: 10.18129/B9.bioc.ontoProc    

processing of ontologies of anatomy, cell lines, and so on

Bioconductor version: Release (3.6)

Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ontoProc")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoProc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ontoProc")

 

PDF R Script ontoProc: RDF ontology processing
PDF   Reference Manual
Text   NEWS

Details

biocViews GO, Infrastructure, Software
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.4), ontologyIndex
Imports Biobase, S4Vectors, methods, AnnotationDbi, stats, utils, shiny
LinkingTo
Suggests knitr, org.Hs.eg.db, org.Mm.eg.db, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me tenXplore
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ontoProc_1.0.0.tar.gz
Windows Binary ontoProc_1.0.0.zip
Mac OS X 10.11 (El Capitan) ontoProc_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ontoProc
Package Short Url http://bioconductor.org/packages/ontoProc/
Package Downloads Report Download Stats

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