DOI: 10.18129/B9.bioc.AnnotationForge    

This is the development version of AnnotationForge; for the stable release version, see AnnotationForge.

Code for Building Annotation Database Packages

Bioconductor version: Development (3.8)

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Hervé Pagès

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("AnnotationForge")):


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PDF R Script AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF R Script Creating probe packages
PDF R Script SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML R Script Making New Organism Packages
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Infrastructure, Software
Version 1.23.0
In Bioconductor since BioC 2.11 (R-2.15) (5.5 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), AnnotationDbi(>= 1.33.14)
Imports DBI, RSQLite, XML, S4Vectors, RCurl
Suggests biomaRt, httr, GenomeInfoDb, Biostrings, affy, hgu95av2.db, human.db0,, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
Depends On Me
Imports Me AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats
Suggests Me AnnotationDbi, AnnotationHub
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Source Package AnnotationForge_1.23.0.tar.gz
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Mac OS X 10.11 (El Capitan) AnnotationForge_1.23.0.tgz
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