To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

In most cases, you don't need to download the package archive at all.

GOSemSim

 

   

This is the development version of GOSemSim; for the stable release version, see GOSemSim.

GO-terms Semantic Similarity Measures

Bioconductor version: Development (3.4)

The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Alexey Stukalov and Chuanle Xiao.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("GOSemSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSemSim")

 

HTML R Script GO Semantic Similarity Analysis
PDF   Reference Manual

Details

biocViews Annotation, Clustering, GO, Network, Pathways, Software
Version 1.99.4
In Bioconductor since BioC 2.4 (R-2.9) (7.5 years)
License Artistic-2.0
Depends R (>= 3.3.0)
Imports AnnotationDbi, GO.db, methods, utils
LinkingTo Rcpp
Suggests AnnotationHub, BiocInstaller, BiocStyle, clusterProfiler, DOSE, knitr, org.Hs.eg.db, testthat
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/GOSemSim
BugReports https://github.com/GuangchuangYu/GOSemSim/issues
Depends On Me
Imports Me clusterProfiler, DOSE, Rcpi
Suggests Me SemDist
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GOSemSim_1.99.4.tar.gz
Windows Binary GOSemSim_1.99.4.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) GOSemSim_1.99.4.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GOSemSim
Package Short Url http://bioconductor.org/packages/GOSemSim/
Package Downloads Report Download Stats

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