GOSemSim

GO-terms Semantic Similarity Measures

Bioconductor version: Development (3.0)

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOSemSim")

To cite this package in a publication, start R and enter:

    citation("GOSemSim")

Documentation

PDF R Script An introduction to GOSemSim
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GO, Network, Pathways, Software
Version 1.23.0
In Bioconductor since BioC 2.4 (R-2.9)
License GPL-2
Depends R (>= 2.10), Rcpp
Imports methods, AnnotationDbi, GO.db, org.Hs.eg.db, Rcpp
Suggests DOSE, clusterProfiler, BiocInstaller, knitr
System Requirements
URL http://bioinformatics.oxfordjournals.org/content/26/7/976.full
Depends On Me tRanslatome
Imports Me clusterProfiler, DOSE, Rcpi
Suggests Me ChIPseeker, ReactomePA

Package Downloads

Package Source GOSemSim_1.23.0.tar.gz
Windows Binary GOSemSim_1.23.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GOSemSim_1.23.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center