DOI: 10.18129/B9.bioc.epiNEM    

This is the development version of epiNEM; for the stable release version, see epiNEM.


Bioconductor version: Development (3.9)

epiNEM is an extension of the original Nested Effects Models (NEM). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways.

Author: Madeline Diekmann & Martin Pirkl

Maintainer: Martin Pirkl <martin.pirkl at bsse.ethz.ch>

Citation (from within R, enter citation("epiNEM")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("epiNEM", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script epiNEM
PDF   Reference Manual
Text   NEWS


biocViews Network, NetworkInference, Pathways, Software, SystemsBiology
Version 1.7.0
In Bioconductor since BioC 3.5 (R-3.4) (2 years)
License GPL-3
Depends R (>= 3.4)
Imports BoolNet, e1071, gtools, stats, igraph, nem, utils, lattice, latticeExtra, RColorBrewer, pcalg, minet, grDevices, graph
Suggests knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown, GOSemSim, AnnotationHub, org.Sc.sgd.db
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epiNEM_1.7.0.tar.gz
Windows Binary epiNEM_1.7.0.zip
Mac OS X 10.11 (El Capitan) epiNEM_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epiNEM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epiNEM
Package Short Url http://bioconductor.org/packages/epiNEM/
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