To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

 

   

This is the development version of clusterProfiler; for the stable release version, see clusterProfiler.

statistical analysis and visualization of functional profiles for genes and gene clusters

Bioconductor version: Development (3.4)

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Li-Gen Wang and Giovanni Dall'Olio.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

HTML R Script Statistical analysis and visualization of functional profiles for genes and gene clusters
PDF   Reference Manual

Details

biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 3.1.3
In Bioconductor since BioC 2.8 (R-2.13) (5.5 years)
License Artistic-2.0
Depends R (>= 3.3.0), DOSE(>= 2.11.4)
Imports AnnotationDbi, ggplot2, GO.db, GOSemSim(>= 1.99.0), GSEABase, IRanges, magrittr, methods, plyr, qvalue, stats, stats4, S4Vectors, tidyr, topGO, utils
LinkingTo
Suggests AnnotationHub, BiocStyle, KEGG.db, knitr, org.Hs.eg.db, pathview, ReactomePA
SystemRequirements
Enhances
URL http://guangchuangyu.github.io/clusterProfiler
BugReports https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me bioCancer, debrowser
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_3.1.3.tar.gz
Windows Binary clusterProfiler_3.1.3.zip
Mac OS X 10.9 (Mavericks) clusterProfiler_3.1.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clusterProfiler
Package Short Url http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report Download Stats

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