MinimumDistance

A package for de novo CNV detection in case-parent trios

Bioconductor version: Development (3.0)

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MinimumDistance")

To cite this package in a publication, start R and enter:

    citation("MinimumDistance")

Documentation

PDF R Script Detection of de novo copy number alterations in case-parent trios
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, Microarray, SNP, Software
Version 1.9.1
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 3.01)
Imports methods, DNAcopy, utils, msm, lattice, ff, foreach, BiocGenerics, S4Vectors, Biobase(>= 2.23.6), IRanges, GenomicRanges, oligoClasses(>= 1.25.8), matrixStats, VanillaICE(>= 1.25.4)
Suggests human610quadv1bCrlmm(>= 1.0.3), SNPchip, RUnit
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source MinimumDistance_1.9.1.tar.gz
Windows Binary MinimumDistance_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MinimumDistance_1.9.0.tgz
Mac OS X 10.9 (Mavericks)
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