DOI: 10.18129/B9.bioc.SingleCellExperiment    

This is the development version of SingleCellExperiment; for the stable release version, see SingleCellExperiment.

S4 Classes for Single Cell Data

Bioconductor version: Development (3.7)

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

Author: Aaron Lun [aut, cph], Davide Risso [aut, cre, cph]

Maintainer: Davide Risso <risso.davide at>

Citation (from within R, enter citation("SingleCellExperiment")):


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HTML R Script An introduction to the SingleCellExperiment class
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biocViews DataImport, DataRepresentation, Infrastructure, SingleCell, Software
Version 1.1.2
License GPL-3
Depends R (>= 3.5), SummarizedExperiment
Imports S4Vectors, methods, BiocGenerics, utils
Suggests testthat, BiocStyle, knitr, rmarkdown, scRNAseq, magrittr, Rtsne
Depends On Me BASiCS, clusterExperiment, DropletUtils, MAST, scater, scPipe, scran, splatter, switchde, TENxBrainData, zinbwave
Imports Me BEARscc, LineagePulse, SC3, scDD, scfind, scmap, slalom
Suggests Me phenopath, scFeatureFilter
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Source Package SingleCellExperiment_1.1.2.tar.gz
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