To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SingleCellExperiment")

In most cases, you don't need to download the package archive at all.

SingleCellExperiment

DOI: 10.18129/B9.bioc.SingleCellExperiment    

This is the development version of SingleCellExperiment; to use it, please install the devel version of Bioconductor.

S4 Classes for Single Cell Data

Bioconductor version: Development (3.6)

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

Author: Aaron Lun [aut, cph], Davide Risso [aut, cre, cph]

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("SingleCellExperiment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SingleCellExperiment")

Documentation

HTML R Script SingleCellExperiment Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infrastructure, SingleCell, Software
Version 0.99.4
In Bioconductor since BioC 3.6 (R-3.4)
License GPL-3
Depends R (>= 3.4), SummarizedExperiment
Imports S4Vectors, methods, BiocGenerics, utils
LinkingTo
Suggests testthat, BiocStyle, knitr, scRNAseq, magrittr, Rtsne
SystemRequirements
Enhances
URL
Depends On Me BASiCS, SC3, scater, scran, splatter, zinbwave
Imports Me scDD, scfind, scmap
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SingleCellExperiment_0.99.4.tar.gz
Windows Binary SingleCellExperiment_0.99.4.zip
Mac OS X 10.11 (El Capitan) SingleCellExperiment_0.99.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/SingleCellExperiment
Package Short Url http://bioconductor.org/packages/SingleCellExperiment/
Package Downloads Report Download Stats

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