VariantTools

Tools for Working with Genetic Variants

Bioconductor version: Development (3.0)

Tools for detecting, filtering, calling, comparing and plotting variants.

Author: Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman

Maintainer: Michael Lawrence <michafla at gene.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("VariantTools")

To cite this package in a publication, start R and enter:

    citation("VariantTools")

Documentation

PDF R Script Introduction to VariantTools
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneticVariability, Genetics, Sequencing, Software
Version 1.7.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends IRanges(>= 1.19.34), GenomicRanges(>= 1.13.43), VariantAnnotation(>= 1.7.35), methods
Imports Rsamtools(>= 1.11.10), BiocGenerics, Biostrings, parallel, gmapR(>= 1.5.15), GenomicFeatures, Matrix, rtracklayer, BiocParallel, GenomeInfoDb
Suggests RUnit, LungCancerLines(>= 0.0.6), RBGL, graph
System Requirements
URL
Depends On Me
Imports Me HTSeqGenie
Suggests Me

Package Downloads

Package Source VariantTools_1.7.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center