TxDb.Hsapiens.UCSC.hg19.knownGene

Annotation package for TranscriptDb object(s)

Bioconductor version: Development (3.0)

Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene")

To cite this package in a publication, start R and enter:

    citation("TxDb.Hsapiens.UCSC.hg19.knownGene")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, TranscriptDb
Version 2.14.0
License Artistic-2.0
Depends GenomicFeatures(>= 1.15.11)
Imports GenomicFeatures, AnnotationDbi
Suggests
System Requirements
URL
Depends On Me cgdv17, chimera, FunciSNP, Homo.sapiens
Imports Me ChIPseeker
Suggests Me AllelicImbalance, AnnotationDbi, beadarray, biomvRCNS, biovizBase, bumphunter, ChIPQC, CRISPRseek, FDb.InfiniumMethylation.hg19, gage, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, ggbio, gmapR, HTSeqGenie, methyAnalysis, methylumi, rtracklayer, SigFuge, SplicingGraphs, trackViewer, VariantAnnotation, VariantFiltering

Package Downloads

Package Source TxDb.Hsapiens.UCSC.hg19.knownGene_2.14.0.tar.gz
Windows Binary TxDb.Hsapiens.UCSC.hg19.knownGene_2.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
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