ensemblVEP

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Development (3.0)

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain <vobencha at fhcrc.org>,

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ensemblVEP")

To cite this package in a publication, start R and enter:

    citation("ensemblVEP")

Documentation

PDF R Script ensemblVEP
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Annotation, Software
Version 1.5.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports Biostrings
Suggests RUnit
System Requirements Ensembl VEP (API version 73) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, http://www.ensembl.org/info/docs/variation/vep/index.html for installation instructions.
URL
Depends On Me
Imports Me
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Package Downloads

Package Source ensemblVEP_1.5.0.tar.gz
Windows Binary ensemblVEP_1.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ensemblVEP_1.5.0.tgz
Mac OS X 10.9 (Mavericks)
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