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Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: Release (3.0)

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at>

Citation (from within R, enter citation("openCyto")):


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HTML R Script An Introduction to the openCyto package
HTML R Script How to write a csv gating template
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends flowWorkspace(>= 3.11.10)
Imports methods, Biobase, gtools, flowCore, flowViz, ncdfFlow(>= 2.11.34), flowStats(>= 3.23.7), flowClust, MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
Suggests flowWorkspaceData, knitr, testthat, utils, tools, parallel
Depends On Me
Imports Me
Suggests Me flowCore

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Package Source openCyto_1.4.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) openCyto_1.4.0.tgz
Mac OS X 10.9 (Mavericks) openCyto_1.4.0.tgz
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