To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

In most cases, you don't need to download the package archive at all.

openCyto

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: Release (3.0)

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("openCyto")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("openCyto")

 

HTML R Script An Introduction to the openCyto package
HTML R Script How to write a csv gating template
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends flowWorkspace(>= 3.11.10)
Imports methods, Biobase, gtools, flowCore, flowViz, ncdfFlow(>= 2.11.34), flowStats(>= 3.23.7), flowClust, MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
Suggests flowWorkspaceData, knitr, testthat, utils, tools, parallel
System Requirements
URL
Depends On Me
Imports Me
Suggests Me flowCore

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source openCyto_1.4.0.tar.gz
Windows Binary openCyto_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) openCyto_1.4.0.tgz
Mac OS X 10.9 (Mavericks) openCyto_1.4.0.tgz
Browse/checkout source (username/password: readonly)
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