GOSim

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: Release (2.14)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")

Citation (from within R, enter citation("GOSim")):

Documentation

PDF R Script GOsim
PDF   Reference Manual

Details

biocViews Clustering, GO, Network, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 2)
Depends GO.db, annotate, igraph
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp, utils
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Package Downloads

Package Source GOSim_1.6.0.tar.gz
Windows Binary GOSim_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GOSim_1.6.0.tgz
Mac OS X 10.9 (Mavericks) GOSim_1.6.0.tgz
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