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Genome wide annotation for Human

Bioconductor version: Release (3.2)

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF   Reference Manual


biocViews AnnotationData, Homo_sapiens, OrgDb, humanLLMappings
Version 3.2.3
License Artistic-2.0
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.31.19)
Imports methods, AnnotationDbi
Suggests annotate, RUnit
Depends On Me AnnotationForge, CoCiteStats, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, FEM, GGHumanMethCancerPanelv1.db, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hgug4845a.db, hguqiagenv3.db, hi16cod.db, Homo.sapiens, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hta20stprobeset.db, hta20sttranscriptcluster.db, hthgu133a.db, hthgu133b.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, huex10stprobeset.db, huex10sttranscriptcluster.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, hugene20stprobeset.db, hugene20sttranscriptcluster.db, hugene21stprobeset.db, hugene21sttranscriptcluster.db, HuO22.db, hwgcod.db, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, JazaeriMetaData.db, LAPOINTE.db, lumiHumanAll.db, meshr, methyAnalysis, Mulder2012, Norway981.db, nugohs1a520180.db, OperonHumanV3.db, PartheenMetaData.db, pathview, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, Roberts2005Annotation.db, SHDZ.db, tRanslatome, u133x3p.db
Imports Me FunciSNP, GEOsearch, GOSim, mirIntegrator, missMethyl, NanoStringQCPro, rCGH, rgsepd, rTRMui, SEPA
Suggests Me AllelicImbalance, annotate, AnnotationDbi, AnnotationFuncs, BiocCaseStudies, bumphunter, categoryCompare, cgdv17, ChIPpeakAnno, ChIPseeker, clusterProfiler, cnvGSA, CRISPRseek, derfinderPlot, DOSE, eisa, gage, gCMAPWeb, GeneAnswers, GenomicFeatures, GenomicRanges, globaltest, gmapR, GoogleGenomics, goProfiles, GOSemSim, goseq, GOstats, groHMM, GSAR, GSEABase, hpar, HTSanalyzeR, HTSeqGenie, ind1KG, InPAS, KEGGgraph, limma, miRLAB, miRNAtap, MLP, mvGST, neaGUI, oneChannelGUI, PGSEA, PSICQUIC, R3CPET, RefNet, RforProteomics, RmiR, RnBeads, RpsiXML, RTopper, rtracklayer, rTRM, SigFuge, ToPASeq, VariantFiltering

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