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graph: A package to handle graph data structures

Bioconductor version: Release (3.1)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("graph")):


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PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual


biocViews GraphAndNetwork, Software
Version 1.46.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10.5 years)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports stats, stats4, tools, utils, BiocGenerics(>= 0.13.11)
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Enhances Rgraphviz
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, gaggle, gaucho, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCyjs, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, ToPASeq, topGO, TRONCO, vtpnet, yeastExpData
Imports Me AnalysisPageServer, BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, ChIPpeakAnno, DEGraph, EnrichmentBrowser, FEM, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, mvGST, NCIgraph, nem, netresponse, OncoSimulR, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO, VariantFiltering
Suggests Me AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, mmnet, MmPalateMiRNA, NetPathMiner, rBiopaxParser, rTRM, SPIA, VariantTools
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Package Source graph_1.46.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) graph_1.46.0.tgz
Mac OS X 10.9 (Mavericks) graph_1.46.0.tgz
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