To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graph")

In most cases, you don't need to download the package archive at all.

graph

 

graph: A package to handle graph data structures

Bioconductor version: Release (3.1)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

 

PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Software
Version 1.46.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10 years)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports stats, stats4, tools, utils, BiocGenerics(>= 0.13.11)
LinkingTo
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
SystemRequirements
Enhances Rgraphviz
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, gaggle, gaucho, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCyjs, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, ToPASeq, topGO, TRONCO, vtpnet, yeastExpData
Imports Me AnalysisPageServer, BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, ChIPpeakAnno, DEGraph, EnrichmentBrowser, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, mvGST, NCIgraph, nem, netresponse, OncoSimulR, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO, VariantFiltering
Suggests Me AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, mmnet, MmPalateMiRNA, NetPathMiner, rBiopaxParser, rTRM, SPIA, VariantTools
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source graph_1.46.0.tar.gz
Windows Binary graph_1.46.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) graph_1.46.0.tgz
Mac OS X 10.9 (Mavericks) graph_1.46.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/graph/tree/release-3.1
Package Short Url http://bioconductor.org/packages/graph/
Package Downloads Report Download Stats

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