graph

graph: A package to handle graph data structures

Bioconductor version: Release (2.14)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("graph")

To cite this package in a publication, start R and enter:

    citation("graph")

Documentation

PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends R (>= 2.10), methods
Imports methods, stats, stats4, tools, utils, BiocGenerics(>= 0.1.11)
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, gaggle, gaucho, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, nem, netresponse, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO
Suggests Me AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, mmnet, MmPalateMiRNA, rBiopaxParser, rTRM, SPIA, VariantTools

Package Downloads

Package Source graph_1.42.0.tar.gz
Windows Binary graph_1.42.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) graph_1.42.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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