To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MethylSeekR")

In most cases, you don't need to download the package archive at all.

MethylSeekR

Segmentation of Bis-seq data

Bioconductor version: Release (3.0)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Citation (from within R, enter citation("MethylSeekR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MethylSeekR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")

 

PDF R Script MethylSeekR
PDF   Reference Manual

Details

biocViews DNAMethylation, MethylSeq, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
Suggests BSgenome.Hsapiens.UCSC.hg18
System Requirements
URL
Depends On Me
Imports Me
Suggests Me methylPipe

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MethylSeekR_1.6.0.tar.gz
Windows Binary MethylSeekR_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MethylSeekR_1.6.0.tgz
Mac OS X 10.9 (Mavericks) MethylSeekR_1.6.0.tgz
Browse/checkout source (username/password: readonly)
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