pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: Release (2.9)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey and Matt Settles

Maintainer: Benilton Carvalho

To install this package, start R and enter:

    source("http:///biocLite.R")
    biocLite("pdInfoBuilder")

To cite this package in a publication, start R and enter:

    citation("pdInfoBuilder")

Documentation

PDF	R Script	Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF	R Script	PDInfo Package Building Affymetrix Mapping Chips
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Infrastructure
Depends	R, methods, Biobase, RSQLite, affxparser, oligo
Imports	Biostrings, IRanges
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.18.0
Since	Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source	pdInfoBuilder_1.18.0.tar.gz
Windows Binary	pdInfoBuilder_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	pdInfoBuilder_1.18.0.tgz
Package Downloads Report	Download Stats

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