CAFE

Chromosmal Aberrations Finder in Expression data

Bioconductor version: Development (3.0)

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CAFE")

Citation (from within R, enter citation("CAFE")):

Documentation

PDF R Script Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version 1.1.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CAFE_1.1.0.tar.gz
Windows Binary CAFE_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CAFE_1.1.0.tgz
Mac OS X 10.9 (Mavericks) CAFE_1.1.0.tgz
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