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This is the development version of biovizBase; for the stable release version, see biovizBase.

Basic graphic utilities for visualization of genomic data.

Bioconductor version: Development (3.5)

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin [aut], Michael Lawrence [aut, ths, cre], Dianne Cook [aut, ths], Johannes Rainer [ctb]

Maintainer: Michael Lawrence <lawrence.michael at>

Citation (from within R, enter citation("biovizBase")):


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PDF R Script An Introduction to biovizBase
PDF   Reference Manual
Text   NEWS


biocViews Infrastructure, Preprocessing, Software, Visualization
Version 1.23.0
In Bioconductor since BioC 2.9 (R-2.14) (5 years)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, S4Vectors(>= 0.9.25), IRanges(>= 1.99.28), GenomeInfoDb(>= 1.5.14), GenomicRanges(>= 1.23.21), SummarizedExperiment, Biostrings(>= 2.33.11), Rsamtools(>= 1.17.28), GenomicAlignments(>= 1.1.16), GenomicFeatures(>= 1.21.19), AnnotationDbi, VariantAnnotation(>= 1.11.4), ensembldb(>= 1.3.8)
Suggests BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer, EnsDb.Hsapiens.v75, RUnit
Depends On Me CAFE, qrqc
Imports Me BubbleTree, ggbio, Gviz, Pviz, qrqc, Rqc
Suggests Me CINdex, derfinder, derfinderPlot, R3CPET, regionReport
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