bsseq

Analyze, manage and store bisulfite sequencing data

Bioconductor version: Development (3.0)

Tools for analyzing and visualizing bisulfite sequencing data

Author: Kasper Daniel Hansen [aut, cre]

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("bsseq")

To cite this package in a publication, start R and enter:

    citation("bsseq")

Documentation

PDF R Script Analyzing WGBS with bsseq
PDF R Script The bsseq user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Software
Version 1.1.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats
Imports scales, stats, graphics, Biobase, locfit
Suggests RUnit, bsseqData
System Requirements
URL
Depends On Me bsseqData
Imports Me DSS
Suggests Me

Package Downloads

Package Source bsseq_1.1.0.tar.gz
Windows Binary bsseq_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) bsseq_1.1.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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