To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRM")

In most cases, you don't need to download the package archive at all.

rTRM

 

   

This is the development version of rTRM; for the stable release version, see rTRM.

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: Development (3.4)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

 

PDF Introduction to rTRM
PDF   Reference Manual

Details

biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.11.2
In Bioconductor since BioC 2.13 (R-3.0) (3 years)
License GPL-3
Depends R (>= 2.10), igraph (>= 1.0)
Imports AnnotationDbi, DBI, RSQLite
LinkingTo
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
SystemRequirements
Enhances
URL https://github.com/ddiez/rTRM
BugReports https://github.com/ddiez/rTRM/issues
Depends On Me
Imports Me rTRMui
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rTRM_1.11.2.tar.gz
Windows Binary rTRM_1.11.2.zip
Mac OS X 10.9 (Mavericks) rTRM_1.11.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rTRM
Package Short Url http://bioconductor.org/packages/rTRM/
Package Downloads Report Download Stats

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