To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

In most cases, you don't need to download the package archive at all.

goseq

 

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: Release (3.1)

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Nadia Davidson <nadia.davidson at mcri.edu.au>

Citation (from within R, enter citation("goseq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")

 

PDF R Script goseq User's Guide
PDF   Reference Manual

Details

biocViews GO, GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.20.0
In Bioconductor since BioC 2.6 (R-2.11) (5.5 years)
License LGPL (>= 2)
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics
LinkingTo
Suggests edgeR, org.Hs.eg.db, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me rgsepd
Imports Me
Suggests Me oneChannelGUI
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source goseq_1.20.0.tar.gz
Windows Binary goseq_1.20.0.zip
Mac OS X 10.6 (Snow Leopard) goseq_1.20.0.tgz
Mac OS X 10.9 (Mavericks) goseq_1.20.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/goseq/tree/release-3.1
Package Short Url http://bioconductor.org/packages/goseq/
Package Downloads Report Download Stats

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