goseq

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: Release (2.14)

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Nadia Davidson <nadia.davidson at mcri.edu.au>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

Citation (from within R, enter citation("goseq")):

Documentation

PDF R Script goseq User's Guide
PDF   Reference Manual

Details

biocViews GO, GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.16.2
In Bioconductor since BioC 2.6 (R-2.11)
License LGPL (>= 2)
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports mgcv, graphics, stats, utils, AnnotationDbi
Suggests GO.db, edgeR, org.Hs.eg.db, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI

Package Downloads

Package Source goseq_1.16.2.tar.gz
Windows Binary goseq_1.16.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) goseq_1.16.2.tgz
Mac OS X 10.9 (Mavericks) goseq_1.16.2.tgz
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