To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiDataSet")

In most cases, you don't need to download the package archive at all.

MultiDataSet

DOI: 10.18129/B9.bioc.MultiDataSet    

This is the development version of MultiDataSet; for the stable release version, see MultiDataSet.

Implementation of MultiDataSet, ResultSet and MethylationSet

Bioconductor version: Development (3.6)

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet, ResultSet and MethylationSet. MultiDataSet is designed for integrating multi omics data sets and MethylationSet to contain normalized methylation data. This package contains base classes for MEAL and rexposome packages.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>

Citation (from within R, enter citation("MultiDataSet")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiDataSet")

Documentation

HTML R Script Adding a new type of data to MultiDataSet objects
HTML R Script Integration of methylation and expression using MultiDataSet
HTML R Script Introduction to MultiDataSet
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataRepresentation, Software
Version 1.5.4
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License file LICENSE
Depends R (>= 3.3), Biobase
Imports BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma
LinkingTo
Suggests MEALData, minfi, minfiData, knitr, rmarkdown, testthat, methylumi, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment
SystemRequirements
Enhances
URL
Depends On Me MEAL
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiDataSet_1.5.4.tar.gz
Windows Binary MultiDataSet_1.5.4.zip
Mac OS X 10.11 (El Capitan) MultiDataSet_1.5.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiDataSet
Package Short Url http://bioconductor.org/packages/MultiDataSet/
Package Downloads Report Download Stats

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