DOI: 10.18129/B9.bioc.MineICA    

Analysis of an ICA decomposition obtained on genomics data

Bioconductor version: Release (3.6)

The goal of MineICA is to perform Independent Component Analysis (ICA) on multiple transcriptome datasets, integrating additional data (e.g molecular, clinical and pathological). This Integrative ICA helps the biological interpretation of the components by studying their association with variables (e.g sample annotations) and gene sets, and enables the comparison of components from different datasets using correlation-based graph.

Author: Anne Biton

Maintainer: Anne Biton <anne.biton at gmail.com>

Citation (from within R, enter citation("MineICA")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script MineICA: Independent component analysis of genomic data
PDF   Reference Manual


biocViews MultipleComparison, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 2.12 (R-3.0) (5 years)
License GPL-2
Depends R (>= 2.10), methods, BiocGenerics(>= 0.13.8), Biobase, plyr, ggplot2, scales, foreach, xtable, biomaRt, gtools, GOstats, cluster, marray, mclust, RColorBrewer, colorspace, igraph, Rgraphviz, graph, annotate, Hmisc, fastICA, JADE
Imports AnnotationDbi, lumi, fpc, lumiHumanAll.db
Suggests biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerVDX
Enhances doMC
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MineICA_1.18.0.tar.gz
Windows Binary MineICA_1.18.0.zip
Mac OS X 10.11 (El Capitan) MineICA_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MineICA
Package Short Url http://bioconductor.org/packages/MineICA/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: