To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("debrowser")

In most cases, you don't need to download the package archive at all.

debrowser

 

   

debrowser: Interactive Differential Expresion Analysis Browser

Bioconductor version: Release (3.4)

Bioinformatics platform containing interactive plots and tables for differential gene and region expression studies. Allows visualizing expression data much more deeply in an interactive and faster way. By changing the parameters, user can easily discover different parts of the data that like never have been done before. Manually creating and looking these plots takes time. With this system users can prepare plots without writing any code. Differential expression, PCA and clustering analysis are made on site and the results are shown in various plots such as scatter, bar, box, volcano, ma plots and Heatmaps.

Author: Alper Kucukural <alper.kucukural at umassmed.edu>, Nicholas Merowsky <nicholas.merowsky at umassmed.edu>, Manuel Garber <manuel.garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Citation (from within R, enter citation("debrowser")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("debrowser")

Documentation

HTML R Script DEBrowser Vignette
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ChIPSeq, Clustering, DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version 1.2.4
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), shiny, ggvis, jsonlite, shinyjs
Imports DT, ggplot2, RColorBrewer, annotate, gplots, AnnotationDbi, DESeq2, DOSE, igraph, grDevices, graphics, stats, utils, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, stringi, reshape2, baySeq, d3heatmap, org.Hs.eg.db, org.Mm.eg.db, limma, edgeR, clusterProfiler, V8, methods, sva
LinkingTo
Suggests testthat, rmarkdown, knitr, R.rsp
SystemRequirements
Enhances
URL https://github.com/UMMS-Biocore/debrowser
BugReports https://github.com/UMMS-Biocore/debrowser/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source debrowser_1.2.4.tar.gz
Windows Binary debrowser_1.2.4.zip
Mac OS X 10.9 (Mavericks) debrowser_1.2.4.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/debrowser/tree/release-3.4
Package Short Url http://bioconductor.org/packages/debrowser/
Package Downloads Report Download Stats

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