OrganismDbi

Software to enable the smooth interfacing of different database packages.

Bioconductor version: Release (2.14)

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

Author: Marc Carlson, Herve Pages, Martin Morgan, Valerie Obenchain

Maintainer: Biocore Data Team <maintainer at bioconductor.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("OrganismDbi")

Citation (from within R, enter citation("OrganismDbi")):

Documentation

PDF R Script OrganismDbi: A meta framework for Annotation Packages
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.14.0), methods, AnnotationDbi(>= 1.16.10), GenomicFeatures
Imports BiocGenerics, graph, RBGL, AnnotationDbi
Suggests Homo.sapiens, Rattus.norvegicus, RUnit
System Requirements
URL
Depends On Me Homo.sapiens, Mus.musculus, Rattus.norvegicus
Imports Me
Suggests Me

Package Downloads

Package Source OrganismDbi_1.6.0.tar.gz
Windows Binary OrganismDbi_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) OrganismDbi_1.6.0.tgz
Mac OS X 10.9 (Mavericks) OrganismDbi_1.6.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center