BSgenome.Hsapiens.UCSC.hg19

Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: Release (2.14)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.3.1000
License Artistic-2.0
Depends BSgenome(>= 1.32.0)
Imports BSgenome
Suggests
System Requirements
URL
Depends On Me BSgenome.Hsapiens.UCSC.hg19.masked, chimera, FDb.InfiniumMethylation.hg19, motifRG
Imports Me BSgenome.Hsapiens.UCSC.hg19.masked, VariantFiltering
Suggests Me ArrayTV, Basic4Cseq, biovizBase, BSgenome, CRISPRseek, customProDB, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, GenomicAlignments, GenomicFeatures, GenomicRanges, ggbio, gmapR, Gviz, h5vc, MEDIPS, MiRaGE, oneChannelGUI, R453Plus1Toolbox, Rsamtools, RSVSim, rtracklayer, SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20111119, SNPlocs.Hsapiens.dbSNP.20120608, SomaticSignatures, spliceR, VariantAnnotation

Package Downloads

Package Source BSgenome.Hsapiens.UCSC.hg19_1.3.1000.tar.gz
Windows Binary BSgenome.Hsapiens.UCSC.hg19_1.3.99.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BSgenome.Hsapiens.UCSC.hg19_1.3.99.tgz
Mac OS X 10.9 (Mavericks) BSgenome.Hsapiens.UCSC.hg19_1.3.99.tgz
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