To install this package, start R and enter:


In most cases, you don't need to download the package archive at all.


Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: Release (3.0)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):


To install this package, start R and enter:



PDF   Reference Manual


biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene
Depends On Me BSgenome.Hsapiens.UCSC.hg19.masked, chimera, motifRG
Imports Me BSgenome.Hsapiens.UCSC.hg19.masked, VariantFiltering
Suggests Me ArrayTV, Basic4Cseq, biovizBase, BSgenome, CRISPRseek, customProDB, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, GenomicAlignments, GenomicFeatures, GenomicInteractions, GenomicRanges, ggbio, gmapR, Gviz, h5vc, MEDIPS, MiRaGE, oneChannelGUI, Pbase, R453Plus1Toolbox, Rariant, rGADEM, Rsamtools, RSVSim, rtracklayer, SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20111119, SNPlocs.Hsapiens.dbSNP.20120608, SomaticSignatures, spliceR, VariantAnnotation, wavClusteR

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BSgenome.Hsapiens.UCSC.hg19_1.4.0.tgz
Mac OS X 10.9 (Mavericks) BSgenome.Hsapiens.UCSC.hg19_1.4.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center