ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq or
ChIP-chip experiments.
The package includes functions to retrieve the sequences
around the peak, obtain enriched Gene Ontology (GO) terms, find
the nearest gene, exon, miRNA or custom features such as most
conserved elements and other transcription factor binding sites
supplied by users. This package leverages the biomaRt, IRanges,
Biostrings, BSgenome, GO.db, multtest and stat packages
| Author |
Lihua Julie Zhu, Herve Pages, Claude Gazin, Nathan Lawson,Simon
Lin, David Lapointe and Michael Green |
| Maintainer |
Lihua Julie Zhu |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ChIPpeakAnno")
Documentation
Details
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| License |
GPL (>= 2) |
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