This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An "intelligent" import function, methylumiR can read the Illumina text files and create a MethyLumiSet. Normalization and quality control features are also included.
| Author | Sean Davis and Sven Bilke |
| Maintainer | Sean Davis |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("methylumi")
| An Introduction to the methylumi package | R Script | |
|---|---|---|
| Reference Manual |
| biocViews | |
|---|---|
| Depends |
R
,
Biobase
,
methods
|
| Imports |
Biobase
,
graphics
,
lattice
|
| Suggests |
lattice
,
limma
,
xtable
|
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
| Package source | methylumi_1.3.3.tar.gz |
|---|---|
| Windows 32-bit binary | methylumi_1.3.3.zip |
| Windows 64-bit binary | methylumi_1.3.3.zip |
| MacOS X 10.5 (Leopard) binary | methylumi_1.3.3.tgz |
| Package Downloads Report | Downloads Stats |