To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

In most cases, you don't need to download the package archive at all.

GSEABase

 

Gene set enrichment data structures and methods

Bioconductor version: Release (3.1)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSEABase")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

 

PDF R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS

Details

biocViews GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version 1.30.2
In Bioconductor since BioC 2.1 (R-2.6) (8 years)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
LinkingTo
Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
SystemRequirements
Enhances
URL
Depends On Me AGDEX, BicARE, cpvSNP, gCMAP, GSVAdata, npGSEA, PROMISE
Imports Me canceR, Category, categoryCompare, cellHTS2, gCMAPWeb, GSRI, GSVA, HTSanalyzeR, mogsa, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me BiocCaseStudies, gage, GlobalAncova, globaltest, GOstats, GSAR, GSEAlm, PGSEA, phenoTest
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSEABase_1.30.2.tar.gz
Windows Binary GSEABase_1.30.2.zip
Mac OS X 10.6 (Snow Leopard) GSEABase_1.30.2.tgz
Mac OS X 10.9 (Mavericks) GSEABase_1.30.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GSEABase/tree/release-3.1
Package Short Url http://bioconductor.org/packages/GSEABase/
Package Downloads Report Download Stats

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